PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g21910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GATA
Protein Properties Length: 280aa    MW: 30816.3 Da    PI: 7.4642
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g21910genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.23e-20204238135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  Tp3g21910 204 CQHCGADKTPQWRAGPSGPKTLCNACGVRYKSGRL 238
                *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-17198248IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.347198234IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-15201261No hitNo description
Gene3DG3DSA:3.30.50.102.4E-15202236IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.28E-16203252No hitNo description
PfamPF003208.0E-18204238IPR000679Zinc finger, GATA-type
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEMESFMDDL LNFSVPEEEE DDVEGRGVVV RSPRNITRRK TGLRQTDSFG LLNPDDPGDV  60
EEEDLEWISN KDAFPVIETF VGVLPPEHFS VSSPERETGE VKQLSPVSVL ETSSHNSTLT  120
TTTTTSNSSG GSNGSTAAAP ASTTAMMSFF FGYNVPTKAR SKRRRTGRRD LRILWTGNNE  180
QGGEPQKRKT PSVAAATVVM GRKCQHCGAD KTPQWRAGPS GPKTLCNACG VRYKSGRLVP  240
EYRPANSPTF SPELHSNSHR KIVEMRKQFM SGDVDRKDCG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418795.11e-137hypothetical protein EUTSA_v10002609mg
SwissprotQ8LAU91e-117GATA1_ARATH; GATA transcription factor 1
TrEMBLV4MXL81e-137V4MXL8_EUTSA; Uncharacterized protein
STRINGBra001925.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-114GATA transcription factor 1